Tutorial

This tutorial page will guide users through the core workflows of Gardener, from preparing datasets to connecting compute resources and launching reproducible dry-lab analyses.

Demo videos walk through the system step by step: one covers the install and a full single-cell RNA run, and four more cover the bulkRNA, ATAC, ChIP, and WGS pipelines. They are embedded in the setup guide below.

The setup guide covers installing Gardener on macOS or Windows, creating your first project, importing a dataset, and running a stage — then connecting a remote machine for sandbox execution, whether that is a Slurm cluster, a single server over SSH, or a SPHERE testbed node.

Open the setup guide