Tutorial

Install Gardener on macOS or Windows, create a project, and import your dataset, then connect the app to your own HPC, whether that is a Slurm cluster, a single server over SSH, or a SPHERE testbed node. Everything runs where your data already lives.

Open the setup guide

Select your dataset, pick an analysis, and fill in the form, then run a single step or the whole pipeline, with every command, parameter, and result tracked. Demos walk through single-cell RNA-seq, bulk RNA-seq, ATAC-seq, ChIP-seq, and whole-genome sequencing end to end.

Open the analysis guide